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While Vatican astronomers search the skies in the hope of learning about the secrets of the universe, archeologists have been exploring beneath the Vatican to learn more about the origins of the Church. Excavations began in June 1939. They found that two levels below St. Peter’s Basilica lies an excavated Roman graveyard full of mausoleums, frescoes, inscriptions and stucco decorations. It was here in the 1940s that experts uncovered the bones of a tall man whose grave had been venerated in early times. Many thought they were the bones of St. Peter, believed to have been martyred in Nero’s Circus nearby. But Time magazine noted, “What the excavators found was a looted grave, so despoiled (probably by the Saracens in 846) that much of it was a featureless hole. There was no trace of the bronze casket in which tradition said Constantine had placed St. Peter’s relics. All that remained, buried at the rear of the grave niche, were a few bones. The Vatican has said only that they are human, that there is no skull among them, and that they are those of a powerfully built person of advanced age but undetermined sex.”

In June 1968, Pope Paul VI announced that bones unearthed during the excavations under St. Peter’s Basilica were, in his judgment, those of Peter the Apostle. “The relics of St. Peter,” he declared, “have been identified in a manner which we believe convincing.”

He based his conclusion on “very patient and accurate investigations” by “worthy and competent persons.”

Vatican archeologists also believed that they identified the tomb of St. Paul in the Roman basilica that bears his name. A sarcophagus was identified in the basilica of St. Paul. The sarcophagus was discovered during excavations carried out in 2002 and 2003 around the basilica, in the south of Rome.” The tomb that we discovered,” said archaeologist Giorgio Filippi,” is the one that the popes and the Emperor Theodosius (379-395) saved and presented to the whole world as being the tomb of the apostle.”

The discovery was made by a team composed exclusively of experts from the Vatican Museum. They had undertaken their exploration in response to a request from the administrator of St. Paul ’s basilica, Archbishop Francesco Gioia. During the Jubilee Year 2000, the archbishop noticed that thousands of pilgrims were inquiring about the location of St. Paul ’s tomb. The excavation effort was guided by nineteenth century plans for the basilica, which was largely rebuilt after a fire in 1823. An initial survey enabled archeologists to reconstruct the shape of the original basilica, built early in the fourth century. A second excavation, under the main altar of the basilica, brought the Vatican team to the sarcophagus, which was located on what would have been ground level for the original fourth-century building.

The Catholic World News Service reported that under the altar a marble plaque was still visible. Dating back to the fourth century, it bore the inscription: “Apostle Paul, martyr.”

As an archeologist, Filippi said that he had no special curiosity to learn whether the remains of St. Paul were still inside that sarcophagus. He said that the tomb should not be opened merely to satisfy curiosity, but he had no doubt that St. Paul was buried on the site, “because this basilica was the object of pilgrimages by emperors; people from all around the world came to venerate him, having faith that he was present in this basilica.”

In 2007, Pope Benedict XVI gave his approval to plans by investigators to examine the interior of the ancient stone coffin. They were given permission to remove a plug with which the coffin had been sealed so an endoscopic probe could be inserted and the contents viewed.

While excavations were being carried out inside Vatican City in 2003 for an underground garage to ease the Vatican ’s parking problems a 2,000-year-old burial ground was discovered. The necropolis, which traces pagan Rome to the birth of Christianity, contained more than forty elaborately decorated mausoleums and 200 individual tombs. Headstones, including one that belonged to a slave of Nero, urns and elaborately decorated frescoes and mosaic floors were uncovered on the site.

The historical importance of the find was described as second only to the necropolis below St Peter’s Basilica. The Guardian of London reported that Giandomenico Spinola, director of the project, described the necropolis as being in an excellent condition because it had been protected by a landslide at the end of the second century. Most of the tombs dated between the era of Augustus (23B.C.-A.D.14) to that of Constantine (306-337).

A monument to Pope Leo XI, a Medici, in white marble, by Alessandro Algardi (1645-1646), took much longer to create than Leo XI reigned. Seventy years old and rather frail when he was elected, he was the 232nd pope and died just twenty-six days into his reign (April 1-27, 1605). Born in Florence, he was the last of the Medici family’s popes. His mother, Francesca Salviati, was a daughter of Giacomo Salviati and Lucrezia de’ Medici, a sister of Leo X, while his father, Ottaviano, was a more distant scion of the Medici family. King Henry IV of France, who had learned to like Leo XI when he was papal legate at his court, is said to have bank-rolled promotion of his election. When Leo took sick after his coronation, he was importuned by many members of the Curia to make one of his grandnephews a cardinal, but Leo had such an aversion to nepotism that he refused. When his confessor urged him to grant it, he dismissed him and sent for another. Because of the brevity of his papacy, the Italians called him Papa Lampo (Lightning Pope).

Algardi also memorialized Pope Leo I, who saved Rome from Attila when the Mongolian conqueror, King of the Huns, was ready and waiting to cross the Po River with his horde and attack the city. Leo, in papal robes, entered Attila’s camp, stood before Attila, and threatened him with the power from St. Peter if he did not turn back and leave Italy unmolested. When Attila agreed to turn back, his servants reportedly asked him why he had capitulated so easily to the Bishop of Rome. Attila answered that all the while the Pope was speaking, there had appeared in the sky above the Pope’s head a vision of St. Peter with drawn sword.

A papal tomb not found in the Vatican is that of Pope Alexander VI.

Historian Elizabeth Lev wrote that generally in the history of the papacy, Pope Alexander VI does not make it into the list of the top ten, twenty or thirty. She wrote, “Alexander became to the papacy what Nero is to the Roman empire, the Pope critics love to hate.” Born Roderigo Borgia in 1431 near Valencia, Spain, he rose to the rank of cardinal with the help of his uncle Pope Callistus III, then, as a favorite of Isabella and Ferdinand of Spain, he was elected Pope in 1492 while Columbus was discovering America in the employ of the same Spanish sovereigns. Contemporaries viewed this election with much trepidation, Lev noted, because all the contracts and titles related to the vast enterprise of the New World would be in Spanish hands.

Alexander did little to court public opinion, exasperating many by leading an openly licentious life and favoring his children, particularly Cesare Borgia, who was accused of several murders during Alexander’s pontificate and was protected if not abetted by his father. Alexander VI fathered seven children, including Lucrezia and Cesare Borgia, by at least two mistresses. Such was Alexander VI’s unpopularity that when he died, perhaps by poisoning, perhaps from the plague, in 1503 at the age of seventy-two, the priests of St Peter’s Basilica at first refused to accept his body for burial. He died on August 18, 1503, in the twelfth year of his pontificate. He was buried on August 19 in the church of Santa Maria della Febbre, Rome, and his body was transferred in 1610 to the church of Santa Maria di Monserrato in Rome.